Publicação
Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy
| Resumo: | Muscle texture analysis in Magnetic Resonance Imaging (MRI) has revealed a good correlation with typical histological changes resulting from neuromuscular disorders. In this research, we assess the effectiveness of several features in describing intramuscular texture alterations in cases of Collagen VI-related myopathy. A T1-weighted Turbo Spin-Echo MRI dataset was used (N<sub>subj</sub> = 26), consisting of thigh scans from subjects diagnosed with Ullrich Congenital Muscular Dystrophy or Bethlem Myopathy, with different severity levels, as well as healthy subjects. A total of 355 texture features were studied, including attributes derived from the Gray-Level Co-occurrence Matrix, the Run-Length Matrix, Wavelet and Gabor filters. The extracted features were ranked using the Support Vector Machine Recursive Feature Elimination (SVM-RFE) algorithm with Correlation Bias Reduction, prior to cross-validated classification with a Gaussian kernel SVM. |
|---|---|
| Autores principais: | Rodrigues, Rafael |
| Outros Autores: | Gómez-García de La Banda, Marta; Tordjman, Mickael; Gómez-Andrés, David; Quijano-Roy, Susana; Carlier, Robert-Yves; Pinheiro, Antonio M. G. |
| Assunto: | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| Ano: | 2021 |
| País: | Portugal |
| Tipo de documento: | documento de conferência |
| Tipo de acesso: | acesso aberto |
| Instituição associada: | Universidade da Beira Interior |
| Idioma: | inglês |
| Origem: | uBibliorum |
| _version_ | 1868420868113170432 |
|---|---|
| author | Rodrigues, Rafael |
| author2 | Gómez-García de La Banda, Marta Tordjman, Mickael Gómez-Andrés, David Quijano-Roy, Susana Carlier, Robert-Yves Pinheiro, Antonio M. G. |
| author2_role | author author author author author author |
| author_facet | Rodrigues, Rafael Gómez-García de La Banda, Marta Tordjman, Mickael Gómez-Andrés, David Quijano-Roy, Susana Carlier, Robert-Yves Pinheiro, Antonio M. G. |
| author_role | author |
| contributor_name_str_mv | uBibliorum |
| country_str | PT |
| creators_json_txt | [{\"Person.name\":\"Rodrigues, Rafael\",\"Person.identifier.orcid\":\"0000-0002-9481-9601\"},{\"Person.name\":\"Gómez-García de La Banda, Marta\"},{\"Person.name\":\"Tordjman, Mickael\"},{\"Person.name\":\"Gómez-Andrés, David\"},{\"Person.name\":\"Quijano-Roy, Susana\",\"Person.identifier.orcid\":\"0000-0002-8503-6111\"},{\"Person.name\":\"Carlier, Robert-Yves\"},{\"Person.name\":\"Pinheiro, Antonio M. G.\",\"Person.identifier.orcid\":\"0000-0002-5968-9901\"}] |
| datacite.contributors.contributor.contributorName.fl_str_mv | uBibliorum |
| datacite.creators.creator.creatorName.fl_str_mv | Rodrigues, Rafael Gómez-García de La Banda, Marta Tordjman, Mickael Gómez-Andrés, David Quijano-Roy, Susana Carlier, Robert-Yves Pinheiro, Antonio M. G. |
| datacite.date.Accepted.fl_str_mv | 2021-05-25T00:00:00Z |
| datacite.date.available.fl_str_mv | 2021-03-29T08:07:10Z |
| datacite.date.embargoed.fl_str_mv | 2021-03-29T08:07:10Z |
| datacite.rights.fl_str_mv | http://purl.org/coar/access_right/c_abf2 |
| datacite.subjects.subject.fl_str_mv | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| datacite.titles.title.fl_str_mv | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| dc.contributor.none.fl_str_mv | uBibliorum |
| dc.creator.none.fl_str_mv | Rodrigues, Rafael Gómez-García de La Banda, Marta Tordjman, Mickael Gómez-Andrés, David Quijano-Roy, Susana Carlier, Robert-Yves Pinheiro, Antonio M. G. |
| dc.date.Accepted.fl_str_mv | 2021-05-25T00:00:00Z |
| dc.date.available.fl_str_mv | 2021-03-29T08:07:10Z |
| dc.date.embargoed.fl_str_mv | 2021-03-29T08:07:10Z |
| dc.format.none.fl_str_mv | application/pdf |
| dc.identifier.none.fl_str_mv | http://hdl.handle.net/10400.6/11126 |
| dc.language.none.fl_str_mv | eng |
| dc.publisher.none.fl_str_mv | IEEE |
| dc.rights.cclincense.fl_str_mv | http://creativecommons.org/licenses/by-nc/4.0/ |
| dc.rights.none.fl_str_mv | http://purl.org/coar/access_right/c_abf2 |
| dc.subject.none.fl_str_mv | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| dc.title.fl_str_mv | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| dc.type.none.fl_str_mv | http://purl.org/coar/resource_type/c_c94f |
| description | Muscle texture analysis in Magnetic Resonance Imaging (MRI) has revealed a good correlation with typical histological changes resulting from neuromuscular disorders. In this research, we assess the effectiveness of several features in describing intramuscular texture alterations in cases of Collagen VI-related myopathy. A T1-weighted Turbo Spin-Echo MRI dataset was used (N<sub>subj</sub> = 26), consisting of thigh scans from subjects diagnosed with Ullrich Congenital Muscular Dystrophy or Bethlem Myopathy, with different severity levels, as well as healthy subjects. A total of 355 texture features were studied, including attributes derived from the Gray-Level Co-occurrence Matrix, the Run-Length Matrix, Wavelet and Gabor filters. The extracted features were ranked using the Support Vector Machine Recursive Feature Elimination (SVM-RFE) algorithm with Correlation Bias Reduction, prior to cross-validated classification with a Gaussian kernel SVM. |
| dirty | 0 |
| eu_rights_str_mv | openAccess |
| format | conferenceObject |
| fulltext.url.fl_str_mv | https://ubibliorum.ubi.pt/bitstreams/31e8f918-2677-4910-a282-936bde7e27be/download |
| funding.funder.alternateName_str_mv | FCT FCT |
| funding.funder.identifier_str_mv | http://doi.org/10.13039/501100001871 http://doi.org/10.13039/501100001871 |
| funding.funder.name_str_mv | Fundação para a Ciência e a Tecnologia Fundação para a Ciência e a Tecnologia |
| funding.identifier_str_mv | UIDB/50008/2020 SFRH/BD/130858/2017 |
| funding.name_str_mv | 6817 - DCRRNI ID OE Bolsa de Doutoramento |
| funding_str_mv | UIDB/50008/2020 info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F50008%2F2020/PT SFRH/BD/130858/2017 info:eu-repo/grantAgreement/FCT/OE/SFRH%2FBD%2F130858%2F2017/PT |
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| identifier.url.fl_str_mv | http://hdl.handle.net/10400.6/11126 |
| instacron_str | ubi |
| institution | Universidade da Beira Interior |
| instname_str | Universidade da Beira Interior |
| language | eng |
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| oai_identifier_str | oai:ubibliorum.ubi.pt:10400.6/11126 |
| organization_str_mv | urn:organizationAcronym:ubi |
| person_str_mv | Rodrigues, Rafael Rodrigues, Rafael https://www.ciencia-id.pt/D112-43CA-98E0 D112-43CA-98E0 http://orcid.org/0000-0002-9481-9601 0000-0002-9481-9601 Gómez-García de La Banda, Marta Tordjman, Mickael Gómez-Andrés, David Quijano-Roy, Susana Quijano-Roy, Susana http://orcid.org/0000-0002-8503-6111 0000-0002-8503-6111 Carlier, Robert-Yves Pinheiro, Antonio M. G. Pinheiro, Antonio M. G. https://www.ciencia-id.pt/2218-265E-17D2 2218-265E-17D2 http://orcid.org/0000-0002-5968-9901 0000-0002-5968-9901 |
| publishDate | 2021 |
| publisher.none.fl_str_mv | IEEE |
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| spelling | engIEEEpt_PTMuscle texture analysis in Magnetic Resonance Imaging (MRI) has revealed a good correlation with typical histological changes resulting from neuromuscular disorders. In this research, we assess the effectiveness of several features in describing intramuscular texture alterations in cases of Collagen VI-related myopathy. A T1-weighted Turbo Spin-Echo MRI dataset was used (N<sub>subj</sub> = 26), consisting of thigh scans from subjects diagnosed with Ullrich Congenital Muscular Dystrophy or Bethlem Myopathy, with different severity levels, as well as healthy subjects. A total of 355 texture features were studied, including attributes derived from the Gray-Level Co-occurrence Matrix, the Run-Length Matrix, Wavelet and Gabor filters. The extracted features were ranked using the Support Vector Machine Recursive Feature Elimination (SVM-RFE) algorithm with Correlation Bias Reduction, prior to cross-validated classification with a Gaussian kernel SVM.application/pdfpt_PTTexture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related MyopathyPersonalRodrigues, RafaelDSpacehttp://dspace.org/items/16431ade-58b1-4db3-849b-718dd28e15bfDSpacehttp://dspace.org/items/16431ade-58b1-4db3-849b-718dd28e15bfRodriguesJorge Rafael MendesCiência IDhttps://www.ciencia-id.ptD112-43CA-98E0ORCIDhttp://orcid.org0000-0002-9481-9601Gómez-García de La Banda, MartaTordjman, MickaelGómez-Andrés, DavidPersonalQuijano-Roy, SusanaDSpacehttp://dspace.org/items/8e15338c-fd50-4495-9b2c-4929ddf3016cDSpacehttp://dspace.org/items/8e15338c-fd50-4495-9b2c-4929ddf3016cQuijano-RoySusanaORCIDhttp://orcid.org0000-0002-8503-6111Carlier, Robert-YvesPersonalPinheiro, Antonio M. G.DSpacehttp://dspace.org/items/94e6047a-198a-41bd-bd6c-b0f21708d8f9DSpacehttp://dspace.org/items/94e6047a-198a-41bd-bd6c-b0f21708d8f9PinheiroAntonioCiência IDhttps://www.ciencia-id.pt2218-265E-17D2ORCIDhttp://orcid.org0000-0002-5968-9901Researcher IDhttps://www.researcherid.comB-2723-2012Scopus Author IDhttps://www.scopus.com8420644500HostingInstitutionOrganizationaluBibliorume-mailmailto:noreplyuBibliorum@ubi.ptnoreplyuBibliorum@ubi.ptISBNIsPartOf978-1-6654-1246-9DOIIsPartOf10.1109/ISBI48211.2021.94339422021-03-29T08:07:10Z2021-05-252021-05-25T00:00:00ZHandlehttp://hdl.handle.net/10400.6/11126http://purl.org/coar/access_right/c_abf2open accessMRITexture AnalysisComputer-aided diagnosisCOL6-related myopathySVM-RFE365879 bytesFundação para a Ciência e a TecnologiaInstituto de Telecomunicações [UIDB/50008/2020]info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F50008%2F2020/PTUIDB/50008/20206817 - DCRRNI IDCrossref Funder IDhttp://doi.org/10.13039/501100001871Fundação para a Ciência e a TecnologiaBolsa de Doutoramento FCT: Texture Analysis of Magnetic Resonance Images for Diagnosis and Monitoring of Neuromuscular Diseases [SFRH/BD/130858/2017]info:eu-repo/grantAgreement/FCT/OE/SFRH%2FBD%2F130858%2F2017/PTSFRH/BD/130858/2017OEBolsa de DoutoramentoCrossref Funder IDhttp://doi.org/10.13039/501100001871other research producthttp://purl.org/coar/resource_type/c_c94fconference object2021-05-25http://creativecommons.org/licenses/by-nc/4.0/http://purl.org/coar/access_right/c_abf2application/pdffulltexthttps://ubibliorum.ubi.pt/bitstreams/31e8f918-2677-4910-a282-936bde7e27be/download18th International Symposium on Biomedical Imaging (ISBI 2021)Nice, France |
| spellingShingle | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy Rodrigues, Rafael MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| status | SINGLETON |
| subject.fl_str_mv | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| title | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| title_full | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| title_fullStr | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| title_full_unstemmed | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| title_short | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| title_sort | Texture Analysis of T1-weighted Turbo Spin-Echo MRI for the Diagnosis and Follow-up of Collagen VI-related Myopathy |
| topic | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| topic_facet | MRI Texture Analysis Computer-aided diagnosis COL6-related myopathy SVM-RFE |
| url | http://hdl.handle.net/10400.6/11126 |
| visible | 1 |